clj-biosequence.entrezgene

->entrezBiosource
(->entrezBiosource src)
Positional factory function for class clj_biosequence.entrezgene.entrezBiosource.

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->entrezDbTag
(->entrezDbTag src)
Positional factory function for class clj_biosequence.entrezgene.entrezDbTag.

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->entrezExtraTerm
(->entrezExtraTerm src)
Positional factory function for class clj_biosequence.entrezgene.entrezExtraTerm.

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->entrezGene
(->entrezGene src)
Positional factory function for class clj_biosequence.entrezgene.entrezGene.

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->entrezGeneComment
(->entrezGeneComment src)
Positional factory function for class clj_biosequence.entrezgene.entrezGeneComment.

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->entrezGeneConnection
(->entrezGeneConnection acc-list)
Positional factory function for class clj_biosequence.entrezgene.entrezGeneConnection.

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->entrezgeneFile
(->entrezgeneFile file encoding)
Positional factory function for class clj_biosequence.entrezgene.entrezgeneFile.

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->entrezGeneReader
(->entrezGeneReader strm)
Positional factory function for class clj_biosequence.entrezgene.entrezGeneReader.

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->entrezGeneSource
(->entrezGeneSource src)
Positional factory function for class clj_biosequence.entrezgene.entrezGeneSource.

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->entrezGeneTrack
(->entrezGeneTrack src)
Positional factory function for class clj_biosequence.entrezgene.entrezGeneTrack.

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->entrezInterval
(->entrezInterval src)
Positional factory function for class clj_biosequence.entrezgene.entrezInterval.

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->entrezMap
(->entrezMap src)
Positional factory function for class clj_biosequence.entrezgene.entrezMap.

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->entrezOrgName
(->entrezOrgName src)
Positional factory function for class clj_biosequence.entrezgene.entrezOrgName.

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->entrezOrgRef
(->entrezOrgRef src)
Positional factory function for class clj_biosequence.entrezgene.entrezOrgRef.

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->entrezOtherSource
(->entrezOtherSource src)
Positional factory function for class clj_biosequence.entrezgene.entrezOtherSource.

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->entrezPcrPrimers
(->entrezPcrPrimers src)
Positional factory function for class clj_biosequence.entrezgene.entrezPcrPrimers.

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->entrezProtein
(->entrezProtein src)
Positional factory function for class clj_biosequence.entrezgene.entrezProtein.

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->entrezSeqLocation
(->entrezSeqLocation src)
Positional factory function for class clj_biosequence.entrezgene.entrezSeqLocation.

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->entrezSubSource
(->entrezSubSource src)
Positional factory function for class clj_biosequence.entrezgene.entrezSubSource.

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default-entrez-comments
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display-string
(display-string entrezmap)
Returns list of display strings from an entrezMap.

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entrez-biosource
(entrez-biosource entrezgene)
Returns a entrezgeneBiosource from an entrezgene.

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entrez-gene-source
(entrez-gene-source entrezgene)
Returns a gene source record from an entrezgene.

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entrez-gene-track
(entrez-gene-track entrezgene)
Returns an entrezGeneTrack record from a entrezgene.

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entrez-location
(entrez-location entrezgene)
Returns a list of location maps from an entrezgene

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entrez-non-unique-keys
(entrez-non-unique-keys entrezgene)
Returns a list of entrezDbtags representing non-unique keys.

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entrez-unique-keys
(entrez-unique-keys entrezgene)
Returns a list of entrezDbtags representing unique keys.

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entrezComments
protocol
members
entrez-comments
(entrez-comments this)
Returns entrezComment record.

homology-comments
(homology-comments this)
Returns homology entrezComment records.

locus-comments
(locus-comments this)
Returns locus entrezComment records.

product-comments
(product-comments this)
Returns product entrezComment records.

property-comments
(property-comments this)
Returns property entrezComment records.

ref-gene-comments
(ref-gene-comments this)
Returns ref-gene entrezComment records.

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genome
(genome biosource)
Returns a vector of the value and integer code for the genome from
an entrezBiosource.
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init-entrezgene-connection
(init-entrezgene-connection acc-list)
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init-entrezgene-file
(init-entrezgene-file file & {:keys [encoding], :or {encoding "UTF-8"}})
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init-gene-reader
(init-gene-reader strm)
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map->entrezBiosource
(map->entrezBiosource m__5869__auto__)
Factory function for class clj_biosequence.entrezgene.entrezBiosource, taking a map of keywords to field values.

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map->entrezDbTag
(map->entrezDbTag m__5869__auto__)
Factory function for class clj_biosequence.entrezgene.entrezDbTag, taking a map of keywords to field values.

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map->entrezExtraTerm
(map->entrezExtraTerm m__5869__auto__)
Factory function for class clj_biosequence.entrezgene.entrezExtraTerm, taking a map of keywords to field values.

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map->entrezGene
(map->entrezGene m__5869__auto__)
Factory function for class clj_biosequence.entrezgene.entrezGene, taking a map of keywords to field values.

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map->entrezGeneComment
(map->entrezGeneComment m__5869__auto__)
Factory function for class clj_biosequence.entrezgene.entrezGeneComment, taking a map of keywords to field values.

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map->entrezGeneConnection
(map->entrezGeneConnection m__5869__auto__)
Factory function for class clj_biosequence.entrezgene.entrezGeneConnection, taking a map of keywords to field values.

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map->entrezgeneFile
(map->entrezgeneFile m__5869__auto__)
Factory function for class clj_biosequence.entrezgene.entrezgeneFile, taking a map of keywords to field values.

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map->entrezGeneReader
(map->entrezGeneReader m__5869__auto__)
Factory function for class clj_biosequence.entrezgene.entrezGeneReader, taking a map of keywords to field values.

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map->entrezGeneSource
(map->entrezGeneSource m__5869__auto__)
Factory function for class clj_biosequence.entrezgene.entrezGeneSource, taking a map of keywords to field values.

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map->entrezGeneTrack
(map->entrezGeneTrack m__5869__auto__)
Factory function for class clj_biosequence.entrezgene.entrezGeneTrack, taking a map of keywords to field values.

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map->entrezInterval
(map->entrezInterval m__5869__auto__)
Factory function for class clj_biosequence.entrezgene.entrezInterval, taking a map of keywords to field values.

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map->entrezMap
(map->entrezMap m__5869__auto__)
Factory function for class clj_biosequence.entrezgene.entrezMap, taking a map of keywords to field values.

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map->entrezOrgName
(map->entrezOrgName m__5869__auto__)
Factory function for class clj_biosequence.entrezgene.entrezOrgName, taking a map of keywords to field values.

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map->entrezOrgRef
(map->entrezOrgRef m__5869__auto__)
Factory function for class clj_biosequence.entrezgene.entrezOrgRef, taking a map of keywords to field values.

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map->entrezOtherSource
(map->entrezOtherSource m__5869__auto__)
Factory function for class clj_biosequence.entrezgene.entrezOtherSource, taking a map of keywords to field values.

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map->entrezPcrPrimers
(map->entrezPcrPrimers m__5869__auto__)
Factory function for class clj_biosequence.entrezgene.entrezPcrPrimers, taking a map of keywords to field values.

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map->entrezProtein
(map->entrezProtein m__5869__auto__)
Factory function for class clj_biosequence.entrezgene.entrezProtein, taking a map of keywords to field values.

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map->entrezSeqLocation
(map->entrezSeqLocation m__5869__auto__)
Factory function for class clj_biosequence.entrezgene.entrezSeqLocation, taking a map of keywords to field values.

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map->entrezSubSource
(map->entrezSubSource m__5869__auto__)
Factory function for class clj_biosequence.entrezgene.entrezSubSource, taking a map of keywords to field values.

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map-method-type
(map-method-type entrezmap)
Returns list of units used in display-str to query mapviewer from
an entrezMap.
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map-proxy
(map-proxy entrezmap)
Returns list of urls to non mapviewer mapviewing resource from an
entrezMap.
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org-name
(org-name org)
Returns a org-name record from an org ref.

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org-ref
(org-ref biosource)
Returns an org-ref from an entrezBiosource.

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origin
(origin biosource)
Returns a vector of the value and integer code for the origin from
an entrezBiosource.
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other-sources
(other-sources comment)
Returns a list of other entrezOtherSource records from an
entrezGeneComment.
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pcr-primers
(pcr-primers biosource)
Returns a pcr primers record from an entrezBiosource.

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pmids
(pmids comment)
Returns a list of pubmed ids from an entrezGeneComment.

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seq-locations
(seq-locations comment)
Returns a list of entrezSeqLocation records from an
entrezGeneComment.
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source-id
(source-id genesource)
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source-name
(source-name genesource)
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string1
(string1 genesource)
Returns the string1 entry from a entrezGeneSource.

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string2
(string2 genesource)
Returns the string1 entry from a entrezGeneSource.

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subsource
(subsource biosource)
Returns a list of subsource records from an entrezBiosource.

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subsource-attribute
(subsource-attribute sub)
Returns the attribute from a subsource.

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subsource-name
(subsource-name sub)
Returns the name of a subsource.

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subsource-type
(subsource-type sub)
Returns a vector of the value and integer code of the subtype of a
subsource.
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walk-comments
(walk-comments start & args)
Recursively steps through levels of comments. For each level a
function and a value can be supplied to filter comments. A final
argument can be supplied to extract a field from the final set of
comments.
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xtra-terms
(xtra-terms comment)
Returns a list of vectors with the tag and value pairs from an
Xtra-Terms in an entrezGeneComment.
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